verses 109. Many of the People of the Scripture long to make you disbelievers after your belief, through envy on their own account, after the truth hath become manifest unto them. Forgive and be indulgent (toward them) until Allah give command. Lo! Allah is Able to do all thing
Also, you must not kill innocent people, Allah will not hold you innocent, I can't remember which verses .
That's what it means.
Sorry to discuss the Koran here
Unlike the Christian theology which states that there is no contradiction and verses must be reconciled to make sense together, Islamic theology follows the principle of ABROGATION.
Meaning, that when a new prophetic instruction is written that contradicts the old, the old is cancelled.
The last stuff that was written was hostile to the unbelievers. Thus effectively abrogating the previous peaceful instructions.
Naskh (tafsir) - Wikipedia